FindAlmostNullomers

Identifies all possible single base pair substitutions, insertions, or deletions, genome-wide that cause the resurfacing of at least one nullomer.

Required arguments:

Argument	Explanation
–genome_filepath	Path to the fasta file containing the genome being analyzed.*
–nullomer_input_filepath	Path to the .txt file containing the nullomers absent from the supplied genome.
–nullomer_output_filepath	Path to the output .txt file where the nullomers absent from the supplied genome will be written, with one nullomer written on each line.
—nullomer_length	Length of nullomers being analyzed.

Outputs:

• VCF-compatible file containing all variants genome-wide that cause at least one nullomer to resurface.